Two sample MR report


SPATA13_Macrophages against UKB-b-18436

Date: 13 January, 2026


Results from two sample MR:

method nsnp b se pval
MR Egger 4 0.0640319 0.1841871 0.7612841
Weighted median 4 -0.0381862 0.0161511 0.0180636
Inverse variance weighted 4 -0.0420919 0.0137994 0.0022863
Simple mode 4 -0.0359812 0.0219067 0.1990324
Weighted mode 4 -0.0359812 0.0217899 0.1972484

Heterogeneity tests

method Q Q_df Q_pval
MR Egger 0.0841956 2 0.9587760
Inverse variance weighted 0.4180459 3 0.9364899

Test for directional horizontal pleiotropy

egger_intercept se pval
-0.0565254 0.097829 0.6217845

Test that the exposure is upstream of the outcome

snp_r2.exposure snp_r2.outcome correct_causal_direction steiger_pval
3.51e-05 0 TRUE 0.5756153

Note - R^2 values are approximate


Forest plot of single SNP MR

plot of chunk chunk5


Comparison of results using different MR methods

plot of chunk chunk6


Funnel plot

plot of chunk chunk7


Leave-one-out sensitivity analysis

plot of chunk chunk8